Moscow Digital Herbarium and the National Depository Bank of Live Systems Initiative (Russia)

Содержание

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Moscow University Herbarium (MW) Founded ca. 1780 The second largest herbarium

Moscow University Herbarium (MW)

Founded ca. 1780
The second largest herbarium in Russia
Six

staff members (science & technical)
Part of the National Depository Bank of Live Systems initiative (launched by the Moscow University)
No international loans due to custom regulations
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Specimen Total 1,011,253 specimens (as of Nov 2016) including: 924,167 vascular

Specimen Total

1,011,253 specimens (as of Nov 2016)
including:
924,167 vascular plants
77,086 bryophytes
ca. 10,000

lichens
Statistics update is available once a year.
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Specimen Ranking 61th in the world 24th among university herbaria 2nd in Russia (after Komarov Institute)

Specimen Ranking
61th in the world
24th among university herbaria
2nd in Russia (after

Komarov Institute)
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Collection Growth Mean annual increase in 2005-2016 was 15,100 specimens In

Collection Growth

Mean annual increase in 2005-2016 was 15,100 specimens
In 2016, we

added 22,013 specimens (expeditions, old collections, gifts, exchange, etc.)
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Taxonomic Outline 39,323 species (excl. historic collections) including: 37,100 vascular plants

Taxonomic Outline

39,323 species (excl. historic collections)
including:
37,100 vascular plants
2,223 bryophytes
Types of ca.

3,000 taxa are curated separately (4,620 specimens).
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Plant Taxonomy in the Moscow University 60 new species of vascular

Plant Taxonomy in the Moscow University

60 new species of vascular plants were

described by the Moscow University staff members in 2012-2016:
Apiaceae: 15 species (M. Pimenov, E. Kljuykov, D. Lyskov et al.)
Amaranthaceae s. l.: 11 species (A. Sukhorukov)
Asparagaceae: 10 species (N. Vislobokov et al.)
Amaryllidaceae s. l.: 9 species (A. Seregin)
Apocynaceae: 2 species (Y. Alexeev)
Cucurbitaceae: 2 species (M. Nuraliev)
Polygonaceae: 2 species (O. Yurtseva)
Thismiaceae: 2 species (M. Nuraliev)
Molluginaceae: 2 species (A. Sukhorukov)
Asteraceae, Centrolepidaceae, Lophiocarpaceae, Orchidaceae, Triuridaceae: 1 species

Seychellaria barbata

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Geographical Scope: Vascular Plants

Geographical Scope: Vascular Plants

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Moscow University Project Moscow University have received 750,000,000 RUR (ca. 10,910,000

Moscow University Project

Moscow University have received 750,000,000 RUR (ca. 10,910,000 Euro)

for foundation of the National Depository Bank of Live Systems from Russian Science Foundation.
4-year project (2015-2018).
Five branches: 1) Plants; 2) Animals; 3) Fungi & Microbes; 4) Human Material; 5) Bioinformatics.
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Moscow University Project: Plants 125,000,000 RUR (ca. 1,820,000 Euro) for plant

Moscow University Project: Plants

125,000,000 RUR (ca. 1,820,000 Euro) for plant studies

(collections, new labs, expeditions, extra salary, etc.) in 2015-2018.
The largest grant in the history of Russian botany.
24% for the Moscow University Herbarium (MW) for digitisation, databasing and management.
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Digitisation as a World Trend Leiden (Netherlands) Paris (France) New York (USA)

Digitisation as a World Trend

Leiden (Netherlands)

Paris (France)

New York (USA)

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Equipment or Services? or

Equipment or Services?

or

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Herbarium Budget in 2015-2016 Contract with a commercial partner: 11,850,000 RUR

Herbarium Budget in 2015-2016

Contract with a commercial partner:
11,850,000 RUR (ca. 172,360

Euro) for digitisation of 786K specimens (or 15.08 RUR per specimen)
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Extra Funding in 2015-2016 Development of the web portal: 2,500,000 RUR

Extra Funding in 2015-2016

Development of the web portal:
2,500,000 RUR (ca. 36,400

Euro)
Additional herbarium facilities (cupboards):
4,800,000 RUR (ca. 69,800 Euro) for the additional space to preserve ca. 192K new specimens
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Digitisation: Imaging as the First Step Only imaging at 300 dpi

Digitisation: Imaging as the First Step

Only imaging at 300 dpi TIFF (JPG

copy)
Basic metadata from folders (ID, species name, area code)
No label data
Free full online access
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Area Codes from Folders ←Area codes of Eastern Europe ↑ Area codes of Middle Asia

Area Codes from Folders

←Area codes of Eastern Europe

↑ Area codes of

Middle Asia
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Metadata Production Table showing presence of 11 specimens of Limonium dichroanthum

Metadata Production
Table showing presence of 11 specimens of Limonium dichroanthum (Rupr.)

Ikonn.-Gal. from M3 geographical area
(Western Tian Shan).
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Barcodes as an Accurate Counter Eastern European collections: 338,940 specimens before

Barcodes as an Accurate Counter

Eastern European collections:
338,940 specimens before barcoding
352,720 specimens

after barcoding
13,780 increase (+4.07%)
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Metadata Example Stipa sibirica Area S2 (Altai & Sayany)

Metadata Example

Stipa sibirica
Area S2
(Altai & Sayany)

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Current Digitisation Rate 785,844 specimens (77.7%) are scanned and available online

Current Digitisation Rate

785,844 specimens (77.7%) are scanned and available online including:
708,209

specimens of vascular plants (300 dpi)
4,632 type specimens of vascular plants (600 dpi)
72,997 labels of bryophytes
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Digital Collections Ranking

Digital Collections Ranking

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Current Digitisation Coverage 2017 2017

Current Digitisation Coverage

2017

2017

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Digitisation: Quick Geotagging Country names were used as geotags 756K specimens

Digitisation: Quick Geotagging

Country names were used as geotags
756K specimens were geotagged

using existing country names from folders
30K specimens were geotagged manually in 2017
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Asian Resources: 301K Specimens Russia 157,200 specimens Middle Asian countries 94,100

Asian Resources: 301K Specimens

Russia 157,200 specimens
Middle Asian countries 94,100
Mongolia 27,300
PR of China

3,940
Vietnam 3,880
Turkey 2,440
India 1,680
Japan 1,620
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Online Access http://plant.depo.msu.ru/ (public access) Russian / English versions 786K specimens

Online Access

http://plant.depo.msu.ru/ (public access)
Russian / English versions
786K specimens at 300

dpi (JPG)
Automatic linking of the collection names with Catalogue of Life taxonomy
No label data at the moment
No geographical coordinates
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https://plant.depo.msu.ru/ Home page

https://plant.depo.msu.ru/

Home page

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https://plant.depo.msu.ru/ Full search form

https://plant.depo.msu.ru/

Full search form

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https://plant.depo.msu.ru/ Geographical areas as the most precise geotags

https://plant.depo.msu.ru/

Geographical areas as the most precise geotags

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https://plant.depo.msu.ru/ “Live search” feature in taxonomic fields

https://plant.depo.msu.ru/

“Live search” feature in taxonomic fields

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https://plant.depo.msu.ru/ Results as a table

https://plant.depo.msu.ru/

Results as a table

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https://plant.depo.msu.ru/ Specimen record

https://plant.depo.msu.ru/

Specimen record

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https://plant.depo.msu.ru/ JPG files are directly available at 300 dpi

https://plant.depo.msu.ru/

JPG files are directly available at 300 dpi

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https://plant.depo.msu.ru/ JPG files are directly available at 300 dpi

https://plant.depo.msu.ru/

JPG files are directly available at 300 dpi

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https://plant.depo.msu.ru/ JPG files are directly available at 300 dpi: label at 100%

https://plant.depo.msu.ru/

JPG files are directly available at 300 dpi: label at 100%

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https://plant.depo.msu.ru/ Gallery feature for quick scrolling of JPG files as slideshow

https://plant.depo.msu.ru/

Gallery feature for quick scrolling of JPG files as slideshow

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https://plant.depo.msu.ru/ Gallery feature for quick scrolling of JPG files as slideshow

https://plant.depo.msu.ru/

Gallery feature for quick scrolling of JPG files as slideshow

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https://plant.depo.msu.ru/ Alternative results page used for Google indexing

https://plant.depo.msu.ru/

Alternative results page used for Google indexing

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https://plant.depo.msu.ru/ Alternative specimen record used for Google indexing

https://plant.depo.msu.ru/

Alternative specimen record used for Google indexing

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Digitisation: Label Capturing as the Second Step 45,000 labels will be

Digitisation: Label Capturing as the Second Step
45,000 labels will be databased in

2017: Caucasus and the Crimea
Contract with highly trained commercial partner
Single-label specimens only
Original label language (no translation)
24 RUR (0.4 USD) per label
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Digitisation: Georeferencing as the Third Step 3,000 specimens were georeferenced in

Digitisation: Georeferencing as the Third Step
3,000 specimens were georeferenced in 2017
A single

highly-trained freelancer
N, E coordinates
10 RUR (0.18 USD) per specimen
Gazetteer with standard localities as a result
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PR and Promotion Four appearances on federal TV Dozens of communications

PR and Promotion

Four appearances on federal TV
Dozens of communications in

news on web portals
Digital Herbarium blog on vk.com
Russian vernacular names (14K) used for indexing
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MW Herbarium by the End of 2018 1,050,000 physical specimens (60th

MW Herbarium by the End of 2018

1,050,000 physical specimens (60th in

the world)
integration of few lesser collections (negotiations are in progress)
930,000 specimens will be imaged (89%)
250,000 specimens will be databased (24%)
10,000 specimens will be georeferenced (1%)